PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G076700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 371aa    MW: 40420.2 Da    PI: 7.6604
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G076700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.5e-08122142526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G Ck Gd C FaHg
  Manes.16G076700.1.p 122 ACPDFRK-GGCKKGDACEFAHG 142
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.43769106IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934118144IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-6122142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5122144IPR000571Zinc finger, CCCH-type
SMARTSM0035611152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMIGESPHSS PTVQIPALDP FFDEPSSPVP SPFANCGNSS SPFLDSLTAL HRYLPSNEPD  60
TLSDDLDLPV DAFSCDHFRM YEFKVRRCAR GRSHDWTECP YAHPGEKARR RDPRRYHYSG  120
TACPDFRKGG CKKGDACEFA HGVFECWLHP ARYRTQPCKD GPACRRRVCF FAHTPDQLRV  180
LPQQSPRGNG SGSGDIEVGS SLRHHFDPYL TKCGSFHSSP TSILASPPMS PQSDSPPISP  240
SSPQVVGGSF NSMSELVASM RGLQLGKMNV GPASWGMQNG SGFESPRGSS LRPGFCSLPS  300
TPTRTMGRSG LGQSDFWDPS LGEEPAMERV ESGRDLRAKM YAKLSKENSL DRANSAGSAP  360
DVGWVSELVK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G076700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597761.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-126C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2C9U9P70.0A0A2C9U9P7_MANES; Uncharacterized protein
STRINGcassava4.1_010032m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-121C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]