PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G053700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 328aa MW: 36471.1 Da PI: 10.3005

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G053700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.5	8.2e-19	18	96	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea+r ++er +++ ++ +W++v +++r++g+ rs++qC++kw+nl ++ykk+++ e++ ++ Manes.16G053700.1.p 18 WTLSETMVLIEAKRMDDERRMKSSdsegrskPAELRWKWVEDYCRRKGCLRSQNQCNDKWDNLMRDYKKVRDYERRIAE 96 ************77777775422333333999*************************************998754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.969	10	81	IPR017877	Myb-like domain
Pfam	PF13837	2.0E-13	17	92	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MADQGGNIVI RDYRKGNWTL SETMVLIEAK RMDDERRMKS SDSEGRSKPA ELRWKWVEDY 60 CRRKGCLRSQ NQCNDKWDNL MRDYKKVRDY ERRIAERGVG NEASSSSYWK LEKIERKEEN 120 LPSNMLIQVY EALVEVVERR GTQKVVITAG GSASNPRPIT TVRPPLSPLL QRQISVPIPV 180 LAPPPRPLPP ALQAQPSPPL PYSQTPLPAV DSDTSEHSNS PAKRRRRRGG GGGGASSGGS 240 ASGSTSHEVG TAISKSASSI AEAIQACEER KERRHRDLLS LHERRLKIEE SRTELNRQGI 300 NGLVDSINNL ANSILALASH KHQSTPK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	KRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G053700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021598083.1	0.0	uncharacterized protein LOC110604244 isoform X1
TrEMBL	A0A2C9U9X9	0.0	A0A2C9U9X9_MANES; Uncharacterized protein
STRING	cassava4.1_031132m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-61	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Manes.16G053700.1.p