PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G030100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 842aa MW: 94075.7 Da PI: 4.308 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 2e-08 | 341 | 360 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G++C+F H Manes.16G030100.1.p 341 ICNFFAK-GWCIRGSSCRFLH 360 8******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.896 | 336 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 336 | 362 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 341 | 360 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-6 | 341 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MPPSSSTAAR TAEYNDDHSP PSSDSPAEIS DSDLDNREQE EPEIEVEEQE EVHNGNVDEE 60 DMEEEEEYEE IEVEEEEEIE EEIEVEEEEE EEEEEEEEEE EEEEEEEEVV EVEEEEEEEE 120 EDDDDDDDDK LDSSKESNVE LNDVGQHKEV EGQLVLSSTL GRSELGLQSN SHIQDSISNP 180 KLSGPLDESL TFQEKVHVNY EDSECCKSGD CLLTTGGNES QQFAVEKDVE AFVKKNSQEL 240 SKHNGDCKVH LCNDKSISDE TTSPSIARNE VSNALAIKDC LSMDTNGILD SEVEVKPMEM 300 QPEDKEQTAS RFSRVVTSEI RAQSPSPSAE FKDWNKRPAV ICNFFAKGWC IRGSSCRFLH 360 INNKADNAKE QLEGDAAVSH LSKGDQFDEG LKNIMEKPKL SGFPDLVASS IGNGSAFPSR 420 FSSEKILPFE NGESQLFHQL DEQQKSSSLP REDLSRGVHL HPDTQQFPSS KGDLGVSSSL 480 KDLGKENLRQ SWPASDYGRY ASAINRGPSF SLTSSMNISP LGSQKLLGND RDFCASRSSP 540 ILQTASPRSG SELENVPLTS VSKDPLCYTE HKAKIFSNDW EPSIPFRPSF FITHTMTSSP 600 GSQYDPLRDS IDLPTAGYKL PFKFSFVSQV TSNLNSSHLP TYGNSVSQIL GPECDNDKST 660 VSSHSRFHEN VLGQNCFTPG KVVGGTSAVN VQKETKPKEE NTSSSSHLNN VPNKRKIDID 720 CDSRQTNDGP RRKKDLKVDR VRQKNEMDVE QKTDGESRTL RHFRAALVDF VKELLRPTWR 780 EGHLSKDAHN KIVKKTVEKV LCTLQPHQIP TTIESIKQYL SSCQPKIAKL IEGYCTKYGK 840 S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 713 | 733 | KRKIDIDCDSRQTNDGPRRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G030100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021635065.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X4 | ||||
TrEMBL | A0A2C9U986 | 0.0 | A0A2C9U986_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_004593m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10805 | 27 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-50 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G030100.1.p |