PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G029800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 37727 Da PI: 8.5576 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.9 | 1.3e-39 | 51 | 111 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Manes.16G029800.1.p 51 PQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 111 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 9.4E-34 | 53 | 109 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-28 | 54 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGNCEKMVVI SPTTNEWPQT QIDEKNSMAS TSKLMEKQGQ ELSQQHHQLQ PQQALKCPRC 60 DSSNTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRV KRAASAVEGG 120 ASASSANPNP PSQTQIDISS NSNHINPLFY GLPTNPSGMN LPFPGRFNSK VSSSVDTVSG 180 YDLQPQLNAL ALGFSSGIMS NEANGFNPTK QIQDVVTSSS LLSNYSIFSA SSSTITTSTT 240 MATLLASNFH QQKFSIKDSR APNHFQTFED LQMSGNSESG ISMKEVKMEQ EQSRLNWNMP 300 CQNQIEQIGF SSSDPSIYWN TATSNTIGAW HDPTNIGSSV TSLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G029800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596527.1 | 0.0 | dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A2C9U8G0 | 0.0 | A0A2C9U8G0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021951m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 2e-37 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G029800.1.p |