PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G015400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 471aa    MW: 51217.7 Da    PI: 4.6844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G015400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053623991254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Manes.16G015400.1.p 362 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 399
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11360415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.05E-6360404No hitNo description
Gene3DG3DSA:4.10.280.101.1E-8364407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAEEFQTGIC GGNWWNLSTS LFMGGGSSPC STTGINAADM GNTYGSWMAT DVMDLKPRSC  60
KLDSNNIINC NSISEFLQEN SQKPQQTDSD SVGSSILMDS SLQMMGFGLS SSSSSSTDWS  120
QTLLRGNGRA ESYNSILQEE MNSSSQIQKD WSPTVEDSSI NGFKAINQDF SLEQQSVNPL  180
SSSGNSTATT CEGLSIGFSM GSASYGYPST LIQNLFDSDP QPQQSLFNNR TINCSSTSNY  240
GTIFNEPSPT WPKLAPFLEP SLPKQQPPPP QPAGGLHFSN NTPFWNSSAT AINDIRPSFV  300
SSSQPQFLVP TFEEKRSCPN LNTKTNNEEV RDSGSVVKKG SEPAFKRPRI ETPSPLPTFK  360
VRKEKLGDRI TALQQLVSPF GKTDTASVLH EAIEYIKFLH DQVSVLSTPY MKNGNPIQHQ  420
QGSENLNEPE GSKQDLKSRG LCLVPISSTF PVTNETTADF WTPTLGGTFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G015400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596055.10.0transcription factor bHLH112 isoform X1
TrEMBLA0A2C9U8330.0A0A2C9U833_MANES; Uncharacterized protein
STRINGcassava4.1_006940m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.15e-63bHLH family protein