PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G172900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 650aa    MW: 74189.4 Da    PI: 8.4769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G172900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07461502240
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          ++W +eE ell ++ +++++g   +W+ I++++g+gR+ +++
  Manes.15G172900.1.p 461 KPWGKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 502
                          69***********************************99876 PP
2Myb_DNA-binding29.22.1e-09592636345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          +W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  Manes.15G172900.1.p 592 AWSAVQERALVQALKTFPKEtsqRWERVAASVP-GKTVNQCKKKFA 636
                          8********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.1E-2192186IPR001623DnaJ domain
SuperFamilySSF465651.57E-1994201IPR001623DnaJ domain
SMARTSM002717.0E-1595170IPR001623DnaJ domain
PfamPF002268.7E-1896175IPR001623DnaJ domain
PROSITE profilePS5007618.71496178IPR001623DnaJ domain
CDDcd062571.16E-1296167IPR001623DnaJ domain
PRINTSPR006258.0E-9101119IPR001623DnaJ domain
PRINTSPR006258.0E-9119134IPR001623DnaJ domain
PRINTSPR006258.0E-9150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.608.5E-5456502IPR009057Homeodomain-like
SuperFamilySSF466892.24E-7457503IPR009057Homeodomain-like
PROSITE profilePS512936.483458513IPR017884SANT domain
SMARTSM007172.8E-6459512IPR001005SANT/Myb domain
PfamPF002492.0E-6461502IPR001005SANT/Myb domain
CDDcd001672.54E-4462502No hitNo description
PROSITE profilePS5129310.287588643IPR017884SANT domain
Gene3DG3DSA:1.10.10.607.6E-6589635IPR009057Homeodomain-like
SMARTSM007173.9E-9589641IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-9591647IPR009057Homeodomain-like
CDDcd001672.38E-6592639No hitNo description
PfamPF002497.0E-8592635IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAVHSRFRLI AYSQELVDGQ PVYVASNSLP IKASKFEPAG HSFHAVALKL LGCEEEDADS  60
EDQKVSSEKD QAYIPSYDSY SSKGKKKSGT GDKQQDHYAL LGLGHLRYLA TEEQIRKSYR  120
EVALKYHPDK QAAILLAEET EAAKQAKKDE IESHFKSIQE AYEVLIDPLK RRIYDSTDEF  180
DDEIPTDCAP HDFYRVFGPA FMRNGRWSVN QPIPSLGDDN TPLKEVESFY DFWYGFKSWR  240
EFPHADEFDI EQAESREHKR WMERQNAKLT EKARKEEYAR IRNLVDNAYR RDPRILRRKE  300
EEKAEKQRKK EAKILAKKLQ EEEALRAAEE EKRCKEEEER RAAEAALQQK KIKEKEKKLL  360
RKERTRLRTL SAPILSQRLL DLGEEDVENL CLTLDIEQLR NICDKMDGKD LLEQAKVLRD  420
ASGSSHDSES NKRAEKKNLQ QNGTVVSNGS VPLSSLEKKE KPWGKEEIEL LRKGMQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA QSIASPLTTR  540
EEIGAAAIKQ GPESSAKKLD NSEESSSRSA NSKNPDEGVA ENGVSSSSEQ DAWSAVQERA  600
LVQALKTFPK ETSQRWERVA ASVPGKTVNQ CKKKFALLKE NFRNKKNAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-2019129519123Zuotin
5dje_B1e-2019129519123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G172900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594661.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2C9UH220.0A0A2C9UH22_MANES; Uncharacterized protein
STRINGcassava4.1_003314m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-126DnaJ domain ;Myb-like DNA-binding domain