PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G149600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 185aa MW: 21255.1 Da PI: 8.6235 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.8e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l++ ++ +G W++ ar g++Rt+k+c++rw++yl Manes.15G149600.1.p 15 KGPWTMEEDFILINHIANHGESVWNSLARAAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Manes.15G149600.1.p 68 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 111 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.087 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.458 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.70E-11 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEKKPCNSLG NEVRKGPWTM EEDFILINHI ANHGESVWNS LARAAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWGNKW SKIAKHLPGR TDNEIKNYWR TRIQKYIKQE 120 ETFAGQSCEI KEHASTSLQV SGMIDTYSPQ SYQETLETFP GATLAPQSTQ ACWSFEDVWS 180 THFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 9 | 117 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G149600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596013.1 | 1e-138 | myb-related protein 305-like | ||||
Swissprot | P81391 | 4e-83 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A2C9UH41 | 1e-136 | A0A2C9UH41_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021053m | 1e-137 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 1e-78 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G149600.1.p |
Publications ? help Back to Top | |||
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