PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G149100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 454aa    MW: 51763.9 Da    PI: 6.9831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G149100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-17212258148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT++Ed  lv++vkq G + W+ Ia++m  gR +kqc++rw+++l
  Manes.15G149100.1.p 212 KGQWTPQEDRMLVHLVKQNGVKKWSQIAKMME-GRVGKQCRERWHNHL 258
                          799*****************************.*************97 PP
2Myb_DNA-binding59.76.2e-19264306145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++WT+eEde+l++a+k+ G++ W+ Ia++++ gRt++ +k++w+
  Manes.15G149100.1.p 264 KDAWTEEEDEILIEAHKEIGNR-WAEIAKKLP-GRTENTIKNHWN 306
                          689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.824207262IPR017930Myb domain
SuperFamilySSF466896.91E-32210305IPR009057Homeodomain-like
SMARTSM007175.4E-16211260IPR001005SANT/Myb domain
PfamPF002499.2E-16212258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-27213265IPR009057Homeodomain-like
CDDcd001672.02E-14215258No hitNo description
PROSITE profilePS5129422.171263313IPR017930Myb domain
SMARTSM007171.3E-17263311IPR001005SANT/Myb domain
PfamPF002498.4E-17264306IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-23266311IPR009057Homeodomain-like
CDDcd001677.62E-14266309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MELDRKLREE FPYLSSLLSD FPLKHEIESG FSSHEAPFSS NKGLFQSIHH LDHHNLHLPS  60
PFNSQYHLDH FTIEGSSKNP FLGVSATCID PLEPLPNGFS SDLNAFVSAA LLPANGGESG  120
YDHRPLHGSL QRRSFGDYNP QKFDEANDPL GQKLTYHHQS LNMRSMNLAK LPDEVSCITG  180
DNGYGKEADH RKDQRFQIKK DGKVHKKAQI IKGQWTPQED RMLVHLVKQN GVKKWSQIAK  240
MMEGRVGKQC RERWHNHLRP DIKKDAWTEE EDEILIEAHK EIGNRWAEIA KKLPGRTENT  300
IKNHWNATKR RQFTRRKGKE ANSKPTILQC YIKNLTSSSA TNHHQENNNP QDYLHKETSV  360
SSADHHHHLL KFPSSSLMHC DHNEGPNKFC VDTNFLFNDS YGFASSSLEE IPCTSVVDES  420
NLEYEISLEL YSLMKGAAAP AKEEMDLLEM ITQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-452103122104C-Myb DNA-Binding Domain
1msf_C6e-452103122104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G149100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595138.10.0transcription factor MYB98-like
TrEMBLA0A2C9UG320.0A0A2C9UG32_MANES; Uncharacterized protein
STRINGcassava4.1_028573m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-69myb domain protein 98