PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G141300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 582aa MW: 63523.4 Da PI: 9.2498 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Manes.15G141300.1.p 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00028 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Manes.15G141300.1.p 147 WKCEKCSKRYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.69E-7 | 70 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-6 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 2.8E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.69E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 130 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MAASSSSVPF FGIRDEDHQN QMTQQHSSTP TSSSAPAPPP QKKKRNLPRT PNPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVKRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARNPPSTL STIASHLYGG SNMSLGVSQV GTQISSMQEQ 240 SSDILRLGGG GRSGQFDHLL PPSMGSTSFR QPSQQMPSSA FFMQEPNQNY HEEHQSQQGL 300 LQNKSFHHGL MQFADIHSTT SNNPPPPASN LFNLSFISSS SSTSNIANSN LPPSGLLLST 360 HFNGHNGASG DGEGSNIFTN NIISDYHHHH HQMTSGVPSL FSSSVQNDKM FPHMSATALL 420 QKAAQMGSTT STNSASLLRS FGSSSSSGIK SNRQLGAANF GGVFNENDNN LHDLMNSFAT 480 GNSSLFASGH GQENSYSGNP EEPKLHQGLN MSIGGSDRLT RDFLGVGQIV RSMSGGFSQR 540 EKHQQLQQPP QPGIEMSSSL DSERNITAQT SQSFGGIGDF Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G141300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208494 | 1e-160 | AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593421.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q9ZUL3 | 1e-152 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A2C9UHR4 | 0.0 | A0A2C9UHR4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_005672m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-143 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G141300.1.p |
Publications ? help Back to Top | |||
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