PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G084800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 347aa MW: 38844.5 Da PI: 8.4277

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G084800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.3e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Manes.15G084800.1.p 14 LPPGFRFYPTDEELLVQYLCRKVAGHQFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102 79*************************9.89***********7777799******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Manes.15G084800.1.p 103 IITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 9999.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-66	9	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.413	14	162	IPR003441	NAC domain
Pfam	PF02365	3.5E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGVQETDPLA QLTLPPGFRF YPTDEELLVQ YLCRKVAGHQ FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLL ESSRKHGSTK LDDWVLCRIY KKNTGSQKFI SSVPSKEHSH 180 NGSSSSSSSH LDDVLDSLPE IDDRFFAFPG TNPIRTTQPP EEKINFNSMC FGNFDWASLA 240 GFNSVPEIIQ SGQPQAQTRG MMDYANNNGD LDVPSLPPHV GHVDSKLGHS TVEEEVQSGA 300 RAHRVDNSGL FLQNANPSTR NFSSSLDPYG FRYWTQAGSG FGFRQN*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGVQETDPLA QLTLPPGFRF YPTDEELLVQ YLCRKVAGHQ FSLQIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLL ESSRKHGSTK LDDWVLCRIY KKNTGSQKFI SSVPSKEHSH  180
NGSSSSSSSH LDDVLDSLPE IDDRFFAFPG TNPIRTTQPP EEKINFNSMC FGNFDWASLA  240
GFNSVPEIIQ SGQPQAQTRG MMDYANNNGD LDVPSLPPHV GHVDSKLGHS TVEEEVQSGA  300
RAHRVDNSGL FLQNANPSTR NFSSSLDPYG FRYWTQAGSG FGFRQN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-111	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-111	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-111	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-111	1	168	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-111	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-111	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-111	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-111	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-111	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-111	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-111	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-111	1	168	7	174	NAC domain-containing protein 19
4dul_A	1e-111	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-111	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00012	PBM	Transfer from AT1G52890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G084800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605161	0.0	KR605161.1 Manihot esculenta NAC transcription factors 23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593341.1	0.0	NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	1e-141	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A0M3R853	0.0	A0A0M3R853_MANES; NAC transcription factors 23
STRING	cassava4.1_010999m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4429	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-121	NAC family protein

Link Out ? help Back to Top
Phytozome	Manes.15G084800.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]