PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G047000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 269aa    MW: 31135.2 Da    PI: 9.5926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G047000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-192269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Manes.15G047000.1.p 22 KGPWTAEEDRLLIEYVRMHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                         79********************************************97 PP
2Myb_DNA-binding51.81.9e-1675119147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Manes.15G047000.1.p  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1581773IPR017930Myb domain
SuperFamilySSF466891.02E-3019116IPR009057Homeodomain-like
SMARTSM007173.9E-172171IPR001005SANT/Myb domain
PfamPF002494.2E-182269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-242376IPR009057Homeodomain-like
CDDcd001674.24E-122469No hitNo description
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129419.3574124IPR017930Myb domain
PfamPF002491.1E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2477123IPR009057Homeodomain-like
CDDcd001677.66E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSWGVMAGHL GWGGLIEEGW RKGPWTAEED RLLIEYVRMH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKVSPEN SEKARNRLLK RQQFQQQQQQ QQQQQQLQQQ QQSQQQQLQL LQLNQLDMKK  180
IMSLLDESEN KVPYVPQIRQ DMATIYPNPA EEHGLLYNMF NANASVPEAS NDEILWDGLW  240
NLDDVHGNFS AACASGKAGM HNLIAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271212417128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G047000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595959.10.0transcription factor MYB2-like
TrEMBLA0A2C9UD480.0A0A2C9UD48_MANES; Uncharacterized protein
STRINGcassava4.1_013947m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-88myb domain protein 305