PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G005100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 585aa    MW: 66014.5 Da    PI: 5.0855
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G005100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.89.7e-872115821374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsev 87 
                          lve Ll+ Ae v ++++e+a++lL+   + +s +g+p+qR+++yf eAL++r++  + +++++   +++s++    +++   a  + +e 
  Manes.15G005100.1.p 211 LVEFLLASAEKVGHQQFERASRLLKYCDNFSSGTGNPVQRVVHYFSEALRERINLGTGRISSKGFWKKQSSDLnqeMTTLNEASLACHER 300
                          57889*************************************************9666666655433333333232333333334499** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           P+++++ +t  qaI + v+g++r+HiiD++i  G+QWp L+qaL sR   +   l+i ++g    +sk+++e tg+rLa+fAe++++pf
  Manes.15G005100.1.p 301 IPFFQVARFTGIQAIIDNVAGAKRIHIIDLEIRCGAQWPVLMQALVSRYdCPLELLKISAIGT---SSKQMIEDTGKRLASFAESMDIPF 387
                          ************************************************9445569********...58********************** PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          +f+v+++ ++ dl+ + ++++ +Ea+a+ + ++ ++l   +  les    ++++++++ P+v+vv+e ea+ ns+sF++rf+e+l +y +
  Manes.15G005100.1.p 388 SFKVVMVPDMLDLKEDLFELDAEEAIAIYSEYSFMSLIFVPNRLES----IMRVLRNIIPRVMVVMEVEANNNSPSFVKRFIESLFFYGS 473
                          ****9999*****************************966666666....**************************************** PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                           fd+++a ++r++ +r+  E  ++++ i+n+va+eg+er+ rh +   Wr+ + ++G  + +ls++   qa+l+l+k++ +   ++  ++
  Manes.15G005100.1.p 474 YFDCFDACMGRDDPNRVITELIFFHQGIRNIVAKEGEERIIRHVKIDVWRSFFARFGIIETELSTSSLYQASLVLKKFDcGSSCTLGMNE 563
                          *******************************************************************************9999******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                          +sl++gWk+ p+ s+S+W+
  Manes.15G005100.1.p 564 KSLLIGWKGTPMHSLSVWK 582
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.535185561IPR005202Transcription factor GRAS
PfamPF035143.3E-84211582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MANAIFPLEE YNFGGIWDDL TSTSKSPKNL DGVNMGKIGR LFGSENWGDD GGTDYGFNQE  60
LVEEGLLFSK YQQQSYLDYE VFDDRSFDIL SPTLLPCMEE IAKLGKISGG IQDASESKKK  120
NQHDFSYASL ELLKKYDIGR LSGRQIVQPR CDAQYTKFAS QELSTEEIIR IAGARFIQSS  180
CEVVGIPSML KNPIGLSFSE LSDEAAKNVE LVEFLLASAE KVGHQQFERA SRLLKYCDNF  240
SSGTGNPVQR VVHYFSEALR ERINLGTGRI SSKGFWKKQS SDLNQEMTTL NEASLACHER  300
IPFFQVARFT GIQAIIDNVA GAKRIHIIDL EIRCGAQWPV LMQALVSRYD CPLELLKISA  360
IGTSSKQMIE DTGKRLASFA ESMDIPFSFK VVMVPDMLDL KEDLFELDAE EAIAIYSEYS  420
FMSLIFVPNR LESIMRVLRN IIPRVMVVME VEANNNSPSF VKRFIESLFF YGSYFDCFDA  480
CMGRDDPNRV ITELIFFHQG IRNIVAKEGE ERIIRHVKID VWRSFFARFG IIETELSTSS  540
LYQASLVLKK FDCGSSCTLG MNEKSLLIGW KGTPMHSLSV WKFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-3721958127378Protein SCARECROW
5b3h_A7e-3721958126377Protein SCARECROW
5b3h_D7e-3721958126377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G005100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594333.10.0DELLA protein RGL1-like
TrEMBLA0A2C9UCS90.0A0A2C9UCS9_MANES; Uncharacterized protein
STRINGcassava4.1_032433m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-52RGA-like 1