PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G154900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 563aa    MW: 61094.2 Da    PI: 7.4183
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G154900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.6e-15182240255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Manes.14G154900.1.p 182 IFRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 240
                          69******************666664477446*************************98 PP
2AP247.93.3e-15283334155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Manes.14G154900.1.p 283 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 334
                          78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-22181250No hitNo description
SuperFamilySSF541714.25E-17181250IPR016177DNA-binding domain
SMARTSM003802.3E-29182254IPR001471AP2/ERF domain
PfamPF008477.4E-12182240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-15182249IPR001471AP2/ERF domain
PROSITE profilePS5103218.808182248IPR001471AP2/ERF domain
PRINTSPR003678.1E-6183194IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18283344IPR016177DNA-binding domain
PfamPF008474.8E-10283334IPR001471AP2/ERF domain
CDDcd000181.76E-24283344No hitNo description
PROSITE profilePS5103219.072284342IPR001471AP2/ERF domain
SMARTSM003801.2E-32284348IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18284343IPR001471AP2/ERF domain
PRINTSPR003678.1E-6324344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MNMDSSSHTQ NWLGFSLSTH HHMNMSIPSS DPSHLCLFEA FNSSTARVGA VDRAQEEDAT  60
AGNTTVTDLS IFTRTGPKLE DFLGCSTTTA PHSQQPQHPP PPPPPPPSVQ SLCPFPTETP  120
VTNASDTSEI YDSELKTIAA SFLRGFSSTT EQTDTTQKQQ SIVQTESAPR KTVDTFGQRT  180
SIFRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQVYLGG YDKEEKAARA YDLAALKYWG  240
PTTTTNFPIS NYQKELEEMK HMTRQEFVAS LRRKSSGFSR GASVYRGVTR HHQHGRWQAR  300
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS IANSNLPIGG  360
ISNKSKNSLD SASETKSIDG CRSADERDLS SASSVTFASQ PPPATSTLSF AMPIKQDPSD  420
FWSNILGCQN PTTTSTSLNN IGKNANCNVA QSVLFQSSTS FPSTTAFNME FNNGSSTVHD  480
SNQNGLLFSG GYLQQQSGGG GGGVSANSSS SVPFATPIAL TSSGSSYEGN SSYGSWIAQS  540
LHSFQSAKPN LSMFQTPIFG ME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G154900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634175.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-161AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2C9UMZ00.0A0A2C9UMZ0_MANES; Uncharacterized protein
STRINGcassava4.1_004734m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-149AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]