PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G145100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 261aa MW: 29765.3 Da PI: 10.6611 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.5 | 7e-13 | 2 | 80 | 10 | 86 |
trihelix 10 LiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Li+a e+ +lrrg+lk+++W+ev++ + + ++ ++ +qCk++++ ++k+yk +k+ + + s++p+f++l+ Manes.14G145100.1.p 2 LIDAWGERYLELRRGNLKQKHWKEVADIVssreEYKKAAKTNIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFFERLD 80 8999999999*******************85444455566888******************99997..67779******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.5E-21 | 2 | 82 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MLIDAWGERY LELRRGNLKQ KHWKEVADIV SSREEYKKAA KTNIQCKNRI DTVKKKYKLE 60 KAKIAAGGGP SKWPFFERLD KLIGPTTKIL VTAAVAAAPL TSKVAMGIPV GIHNGGANSE 120 DSLPPEKKLR GVVQRGVNTK EVKERKGWRN LIRMLAQVIL KFEEVYEQAK NMKLQQVVLM 180 EKIRMKFARE LELQMMQFFI KTQIETSQLK CTRREEMIVI KIITSVVTHF TDVLKEFNFF 240 SLSATYHVLG MIKSLGKILS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G145100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609286.1 | 1e-109 | trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 1e-45 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2C9UMQ7 | 0.0 | A0A2C9UMQ7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024387m | 1e-141 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-33 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G145100.1.p |