PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G130400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C3H

Protein Properties

Length: 345aa MW: 38310.1 Da PI: 8.0373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G130400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.6	5e-09	86	111	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f+ G Ck G++C+FaHg+ Manes.14G130400.1.p 86 FKTRMCAKFRT-GNCKNGENCNFAHGM 111 699****99.***********95 PP
2	zf-CCCH	29.6	1.2e-09	149	172	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H Manes.14G130400.1.p 149 KMKLCKKFYNGEECPYGDRCNFLH 172 789*****66********** PP
3	zf-CCCH	42.1	1.5e-13	233	259	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ Manes.14G130400.1.p 233 WKTKLCTKWETTGQCPFGEKCHFAHGQ 259 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	3.3E-15	81	118	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-8	83	116	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.253	85	112	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.3E-5	85	111	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-6	86	111	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.333	147	175	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-7	147	174	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-4	147	174	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-9	149	173	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-7	149	172	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-17	228	264	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-10	231	263	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.535	232	260	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-6	232	259	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-11	233	259	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSYSDSRSPF MSTQLSYQSG SDAIGIWPQF SLNNAEQFDS LSQFEQLQPP YKRPRNCEDS 60 SSLSVNSKMP LPNNLPVNKG TTNIFFKTRM CAKFRTGNCK NGENCNFAHG MQDLRQPPPN 120 WQELVGVGAR GEEDRSAGNW DDDQRIIHKM KLCKKFYNGE ECPYGDRCNF LHEDPSKFRD 180 DVGRFRESSA ISIGTTGQPM VPGTGGLNAT EVNKPVNNTG SDAYRANMKP VYWKTKLCTK 240 WETTGQCPFG EKCHFAHGQA ELQVPGGRAE GEPGNAGSIL AKPPPILANN VSPMMTASVP 300 NVIEEGQSKK CLFKWKGPKK INRIYGDWLD DLPLVQNLPN QVES*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSYSDSRSPF MSTQLSYQSG SDAIGIWPQF SLNNAEQFDS LSQFEQLQPP YKRPRNCEDS  60
SSLSVNSKMP LPNNLPVNKG TTNIFFKTRM CAKFRTGNCK NGENCNFAHG MQDLRQPPPN  120
WQELVGVGAR GEEDRSAGNW DDDQRIIHKM KLCKKFYNGE ECPYGDRCNF LHEDPSKFRD  180
DVGRFRESSA ISIGTTGQPM VPGTGGLNAT EVNKPVNNTG SDAYRANMKP VYWKTKLCTK  240
WETTGQCPFG EKCHFAHGQA ELQVPGGRAE GEPGNAGSIL AKPPPILANN VSPMMTASVP  300
NVIEEGQSKK CLFKWKGPKK INRIYGDWLD DLPLVQNLPN QVES*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G130400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633978.1	0.0	zinc finger CCCH domain-containing protein 39
Refseq	XP_021633979.1	0.0	zinc finger CCCH domain-containing protein 39
Swissprot	Q9LT81	1e-101	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	A0A251JD93	0.0	A0A251JD93_MANES; Uncharacterized protein
STRING	XP_002524459.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8333	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-104	C3H family protein

Link Out ? help Back to Top
Phytozome	Manes.14G130400.1.p