PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G121400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 131aa MW: 14953.1 Da PI: 10.6892 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.5e-10 | 14 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +WT+ Ed++l d++ ++G+g ++R++k+c++rw++yl Manes.14G121400.2.p 14 RVAWTPPEDKRLMDYISMHGPG----------LNRCGKSCRLRWLNYL 51 679*****************99..........79*************7 PP | |||||||
2 | Myb_DNA-binding | 58.1 | 2e-18 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Manes.14G121400.2.p 57 RGKFSEDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNHWNTC 101 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.947 | 9 | 51 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-25 | 13 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0028 | 13 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-8 | 14 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.26E-5 | 16 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-14 | 16 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.662 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-16 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-17 | 57 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 59 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.29E-12 | 59 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MGRASTSSKE AFNRVAWTPP EDKRLMDYIS MHGPGLNRCG KSCRLRWLNY LRPGIKRGKF 60 SEDEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNHWNT CLAKKAKDLN FTLPRLQKEK 120 QSPSSSTSDN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 106 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G121400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634028.1 | 2e-89 | transcription factor TT2-like | ||||
Refseq | XP_021634029.1 | 2e-89 | transcription factor TT2-like | ||||
Swissprot | Q9FJA2 | 4e-46 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A2C9UL39 | 2e-91 | A0A2C9UL39_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022994m | 2e-68 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-48 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G121400.2.p |