PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G115200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 219aa    MW: 25262.5 Da    PI: 9.4862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G115200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151259148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W +eEd++l+ +v+ +G g+W+t++++ g+ R +k+c++rw +yl
  Manes.14G115200.1.p 12 KGLWKPEEDLILKTYVETHGEGNWATVSEKSGLMRGGKSCRLRWKNYL 59
                         678*******************************************97 PP
2Myb_DNA-binding54.72.4e-1765110148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Manes.14G115200.1.p  65 RGEMSQEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110
                          8999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-22662IPR009057Homeodomain-like
PROSITE profilePS5129417.469759IPR017930Myb domain
SuperFamilySSF466891.76E-289106IPR009057Homeodomain-like
SMARTSM007172.1E-121161IPR001005SANT/Myb domain
PfamPF002499.9E-141259IPR001005SANT/Myb domain
CDDcd001672.12E-91559No hitNo description
PROSITE profilePS5129425.88360114IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2463113IPR009057Homeodomain-like
SMARTSM007174.0E-1764112IPR001005SANT/Myb domain
PfamPF002491.4E-1565110IPR001005SANT/Myb domain
CDDcd001679.43E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MENKQVKPPI KKGLWKPEED LILKTYVETH GEGNWATVSE KSGLMRGGKS CRLRWKNYLR  60
PNIKRGEMSQ EEEDLIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKRCRTGKRK  120
PTDPSNHQNG NDKYKSKKQC NSQTTSSTSP KSNPEESDGK KKEKEESTVT NTWIQDAQSM  180
NYYIESPVMP VCNDAFVLND EPFIAYWDSF VLFESFGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2481163110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G115200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634922.11e-163transcription factor MYB82-like isoform X1
SwissprotQ9LTF73e-65MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A2C9ULU21e-162A0A2C9ULU2_MANES; Uncharacterized protein
STRINGcassava4.1_027214m1e-162(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.17e-66myb domain protein 82