PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G108300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 307aa    MW: 34630.2 Da    PI: 6.83
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G108300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.82.4e-15223248126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +ktelC+ +++tGtC+yGd C+FaHg
  Manes.14G108300.1.p 223 FKTELCNKWQETGTCPYGDHCQFAHG 248
                          79***********************8 PP
2zf-CCCH215.8e-07261286126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykte Cr  +++ +C+yG rC+F H+
  Manes.14G108300.1.p 261 YKTEVCRMVLAGDICPYGHRCHFRHV 286
                          9**********55**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.7E-20217255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-11219254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.615222250IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9222249IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-12223248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8256290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-11256287IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169260288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQNDAASTTA NDDLIVATKS RDFLPNEVDF TSIFCPESPH TLTPYVDTRF VTQQQDLINR  60
NALCITRLRE AAMEVESLRQ ENAALRSVNR ELNNHLSFLI QASVQKHCLS SDYNTTSFEI  120
LNGFRNLCIT GGDGGEEMCE HESPTSVMEV QTVDATERIS LPKSISVRSN GYLKTSQAGV  180
SKTRGVTRPK TASPIKAVQK VYVRGGKTEE EPLELEVYNQ GMFKTELCNK WQETGTCPYG  240
DHCQFAHGIE ELRPVIRHPR YKTEVCRMVL AGDICPYGHR CHFRHVLTEE ERFMGQLKPR  300
AIKLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21223285466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G108300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894892e-50AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634804.10.0zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F54e-88C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2C9UKN80.0A0A2C9UKN8_MANES; Uncharacterized protein
STRINGcassava4.1_022862m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-90C3H family protein