PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G097000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 475aa    MW: 52698 Da    PI: 9.917
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G097000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP149.52.2e-46862392133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec.eaesssssasnsssg 88 
                          +gkkdrhskihT++g+RdRR+Rls+++a++fF Lqd+LGfdk+skti+WL++++k+aikel ++  s++  + +   ++ +ss+s+s++ 
  Manes.14G097000.1.p  86 TGKKDRHSKIHTAQGPRDRRMRLSVQIARKFFNLQDMLGFDKASKTIDWLFTKSKAAIKELIDSlpSAKR-NGSsGGDQTVSSTSESEIM 174
                          79**************************************************************642222.3333666666666666666 PP

                  TCP  89 ....................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                              +   s++ ++ +++++   ++la+esr karararert+ek++ik
  Manes.14G097000.1.p 175 lpgitmtpdngdkremvvegEPFVSNPRQRLKKTNKPVLNSLARESRDKARARARERTKEKQKIK 239
                          8888899999999999**97555555566666666666799999******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-4486237IPR005333Transcription factor, TCP
PROSITE profilePS5136937.17588146IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.806218235IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MQEADHSSSS LHFPLPFLDQ RDLLLSDVFT QHHPQQQQIL VSSANLAAES TREMNPAVSK  60
KATRSNNKKQ RSNMNGTKQP ISRKRTGKKD RHSKIHTAQG PRDRRMRLSV QIARKFFNLQ  120
DMLGFDKASK TIDWLFTKSK AAIKELIDSL PSAKRNGSSG GDQTVSSTSE SEIMLPGITM  180
TPDNGDKREM VVEGEPFVSN PRQRLKKTNK PVLNSLARES RDKARARARE RTKEKQKIKG  240
LVKSKHFSQA NPNKLEQLGS ASSLENGESL GFGSQEMESS SKMVREEEEE EPATYLLQHQ  300
MNSVRIVDKF LGLTSAPQSC SSFYLSGNFV VPSVGGADFE DEFSGFPGNW DISNGRELQN  360
IHCAMPNMKL STGNVHVQNP RAIFMTTSDA RKQNSSSNFS AISNVQEQNL SSAFMPFLNS  420
HEENPCSVFI SDSNEQNPSP SPMTAMDNAG LRSHLTKDQF SCNSNAANKF GSLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G097000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634680.10.0transcription factor TCP12-like
TrEMBLA0A2C9ULA80.0A0A2C9ULA8_MANES; Uncharacterized protein
STRINGcassava4.1_025363m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-30TCP domain protein 12