PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G084400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 150aa MW: 17198.4 Da PI: 6.7829 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.2 | 4.1e-29 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkat 86 lp+G+rF Ptdeelv++yL +k+ k+ ++ + i+ ++y+ P++L +++ +e+ewyfF+ ++ + ++++ r++ g+Wk++ Manes.14G084400.1.p 11 LPVGYRFLPTDEELVTHYLMNKAFYKPlpAHVGQDINASELYSKPPNTLV-TLSCGEREWYFFIYGEEDSVGERKTIRIVGdgIGFWKSS 99 799***********************9443344459999**********6.777899**********9999889999987734678**** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g++k++++++g++ glk +++++g+ p++++t+W m+ yrl Manes.14G084400.1.p 100 GQEKSICNSDGNVFGLKFQFTYFSGTFPNAKRTHWRMDVYRL 141 ****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-31 | 8 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.795 | 11 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-17 | 12 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MDGQSGILAE LPVGYRFLPT DEELVTHYLM NKAFYKPLPA HVGQDINASE LYSKPPNTLV 60 TLSCGEREWY FFIYGEEDSV GERKTIRIVG DGIGFWKSSG QEKSICNSDG NVFGLKFQFT 120 YFSGTFPNAK RTHWRMDVYR LPTQYYPAQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-17 | 11 | 141 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G084400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605184 | 0.0 | KR605184.1 Manihot esculenta NAC transcription factors 46 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593027.1 | 1e-111 | NAC domain-containing protein 101-like | ||||
TrEMBL | A0A0M4FP22 | 1e-109 | A0A0M4FP22_MANES; NAC transcription factors 46 | ||||
STRING | cassava4.1_022395m | 1e-110 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14439 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 2e-23 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G084400.1.p |
Publications ? help Back to Top | |||
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