PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G084100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 551aa    MW: 60780.8 Da    PI: 8.4365
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G084100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003497116221
                          EETTTTEEESSHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                          +C+ Cgk+F ++  L  H++
  Manes.14G084100.1.p  97 SCKECGKVFQSWKALFGHMK 116
                          6******************7 PP
2zf-C2H210.90.0014464486123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp C k+F++   L  H r+H
  Manes.14G084100.1.p 464 HECPVCLKVFPSGQALGGHKRSH 486
                          78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.1E-6832IPR007087Zinc finger, C2H2
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723931IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-9931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-991118No hitNo description
SMARTSM003550.0196118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.44896123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
PfamPF139121.5E-798118IPR007087Zinc finger, C2H2
PfamPF139122.8E-12376401IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388377404IPR007087Zinc finger, C2H2
SMARTSM003550.06377399IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.07E-7377399No hitNo description
PROSITE patternPS000280379399IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-7459486No hitNo description
PROSITE profilePS501579.764464491IPR007087Zinc finger, C2H2
PfamPF139125.6E-13464486IPR007087Zinc finger, C2H2
SMARTSM003550.083464486IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280466486IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MEEDQEFRHV CKFCSKSFSC GRSLGGHMRS HMINDISAQA DGTKLTRKKL PSLPNNNGAN  60
NNTSFNEAAG YGLRENPKKT WRLADHSGED TSVLDKSCKE CGKVFQSWKA LFGHMKCHAL  120
EKEKVSNNNS LEEQQDSWTS ANNQKLVMDS QSDNETAAPN RRKRSKRRIR YMGAENSSSL  180
SFANNASSSV SEIEQEQEEV AMCLMMLSRD AAQWGGLNSV AESSDNNSAF LETNLVSSKT  240
EGKSFVCTGT KTVKMKKLGE KLETGKFEDD EYFKVENRKS EFSASGISRK GFTKNDKAKK  300
PQLDDEHGAQ NSGFKLAKNF TRETSLDQTG MVAKSSSSKR KLSDSSDKKL KSDYLKKLTT  360
DASDSEACKN TDKSSRFECT TCNKVFHSYQ ALGGHRASHK KTKGCFASRI DSSENSIETE  420
PRPDTTADSK LIKTIKNEIS ADHLAIDCDD KAETSCGAKK SKGHECPVCL KVFPSGQALG  480
GHKRSHLVGA PEAKNNQNIA IQEPIPPVRD FLDLNLPAPV EEEGNGLVGF NPWWIRSNHK  540
HEPLVGLISN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338350KRKLSDSSDKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G084100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021591974.10.0uncharacterized protein LOC110599726
TrEMBLA0A2C9UJY70.0A0A2C9UJY7_MANES; Uncharacterized protein
STRINGcassava4.1_004902m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-30C2H2-like zinc finger protein