PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G034400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 239aa    MW: 27224.7 Da    PI: 7.2581
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G034400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.5e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lvd +  +G  +W+++++  g++R++k+c++rw +yl
  Manes.14G034400.1.p 14 KGPWTAEEDKKLVDFILTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding48.61.8e-1572111647
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          + E++l  d++++lG++ W++Ia++++ gRt++++k++w+++
  Manes.14G034400.1.p  72 EAEEQLVMDLHARLGNR-WSKIAARLP-GRTDNEIKNHWHTH 111
                          67***************.*********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21562IPR009057Homeodomain-like
PROSITE profilePS5129415.552961IPR017930Myb domain
SuperFamilySSF466892.16E-2711108IPR009057Homeodomain-like
SMARTSM007179.1E-141363IPR001005SANT/Myb domain
PfamPF002497.6E-161461IPR001005SANT/Myb domain
CDDcd001672.68E-101661No hitNo description
PROSITE profilePS5129426.63162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2363117IPR009057Homeodomain-like
SMARTSM007175.3E-1366114IPR001005SANT/Myb domain
CDDcd001674.33E-1071112No hitNo description
PfamPF002491.1E-1372111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRQPCCDKF GVKKGPWTAE EDKKLVDFIL THGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NEAEEQLVMD LHARLGNRWS KIAARLPGRT DNEIKNHWHT HIKKKLIKMG  120
IDPVTHQPLH KQDNKGAAAS HDVIYYDHQP NFSGDQQQIS KNNCEAHASS SCNTTPTESS  180
EPSSNDDPLM SYIFSDSFLE DSKWNFPVEY CEFGMFSPEG NCPWFLEHKD IGDDCFGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G034400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592333.10.0protein ODORANT1-like
SwissprotQ50EX66e-89ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2C9UK861e-180A0A2C9UK86_MANES; Uncharacterized protein
STRINGcassava4.1_023988m1e-180(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.12e-84myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]