PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G026300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 272aa    MW: 31206.7 Da    PI: 7.17
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G026300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l ++v ++G g+W++++   g++R +k+c++rw +yl
  Manes.14G026300.1.p 15 KGLWSPEEDQKLRNYVLKHGHGCWSSVPINAGLRRNGKSCRLRWINYL 62
                         678*******************************************97 PP
2Myb_DNA-binding49.21.2e-1568113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++ +E+e +++++++lG++ W+  a++++ gRt++++k++w+++l
  Manes.14G026300.1.p  68 RGTFSLQEEETILNLHRLLGNK-WSQMAQHLP-GRTDNEIKNYWHSHL 113
                          899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0741066IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-231065IPR009057Homeodomain-like
SuperFamilySSF466898.07E-2912109IPR009057Homeodomain-like
SMARTSM007171.1E-121464IPR001005SANT/Myb domain
PfamPF002494.5E-151562IPR001005SANT/Myb domain
CDDcd001674.93E-101862No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2566117IPR009057Homeodomain-like
PROSITE profilePS5129420.08867117IPR017930Myb domain
SMARTSM007171.0E-1467115IPR001005SANT/Myb domain
PfamPF002493.4E-1468113IPR001005SANT/Myb domain
CDDcd001671.40E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGCRSSDKPK PKHRKGLWSP EEDQKLRNYV LKHGHGCWSS VPINAGLRRN GKSCRLRWIN  60
YLRPGLKRGT FSLQEEETIL NLHRLLGNKW SQMAQHLPGR TDNEIKNYWH SHLKKKIHKA  120
DHGVLEEPNA HDTSSDNLES NNRDQSVVQL SDHSPKKAYR SSLPKLMFAE WLSLDSFSSL  180
NEPIMGSLDQ NNSRFQDNLM QGCVLNEGTF CNSEFHNSIS DASAEEMFSS QFRFEWESSG  240
NDQFVDFGSG DDICSEFTVN NDLMFIQNYK H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23111173108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G026300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346604e-36KM034660.1 Jatropha curcas clone JcMYB040 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633872.10.0transcription factor LAF1-like
TrEMBLA0A2C9UJ630.0A0A2C9UJ63_MANES; Uncharacterized protein
STRINGcassava4.1_026616m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-61myb domain protein 19