PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G024700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 710aa    MW: 79286.5 Da    PI: 7.5936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G024700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-057798223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         kC++C++ F ++ n++rHir+H
  Manes.14G024700.1.p 77 KCEKCSREFFSSINYRRHIRVH 98
                         7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.4576103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-477107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MPIAKLKAAN NTDVMKTEEG NDSLDTFIRQ AIGKEPFLSF SRAGDSPVQW IQLLHALDQQ  60
DLPGWPLLTP LKVQMQKCEK CSREFFSSIN YRRHIRVHHR LKKLDKGSSK NRDLLGTFWD  120
KLSEDEAKEI LSFKDVTLEK VAGSSIIKAM MGLIRKPGFS SLPQYCLRAG SALLDIIQAR  180
PSRFPLSSEE LFSTLDDSSE KTFLCGTAVS MQKYIFDGEA EKIGLEMKNL VACTGFLVEQ  240
KLVKAWLADK DAEALRCQKL LVEEEEAAQR RQAELLEKKR QKKLRQKEQK GKEQRQEEQA  300
DFNEQIDDAV EAVSSAVEQF PLTASDSGMD GLEALSSHVP SSFEPFQPPS MDEDIDLEIP  360
TGSGSDPGSS HNVERRTVQR NNRRHLVLTR WQLSPKSQWN YVTNGFHASK NSQAQKSSSM  420
QKHGNHGDSK PVPSINGNKM WSRKPKPDYS GDGLKIRVQK EAVSLPDHSK KHEVLIGSIS  480
VALENCNQDE ANHFDGARDD FLSEYQLPKK SNIQDKQNRP ESNHFSANRS KIKLWRPVSR  540
NGTKDPISVE NRATEFQVDG VAGKGDDHMS SEESFLSSCS VDDNNGVTGN SLPLLQETLR  600
RGSLHFSCQA AKAFLAERWK EAIAAEHVKL VLSPDLKSSE YMEILNDCLV DVAESSDIKK  660
CSLLGNMENQ LVDAGVHESS TTGASKAKFR TKPEKGAKLK YIPKQKAVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283EKKRQKKL
2374380RRTVQRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G024700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592622.10.0uncharacterized protein LOC110600165
RefseqXP_021592623.10.0uncharacterized protein LOC110600165
TrEMBLA0A2C9UHV40.0A0A2C9UHV4_MANES; Uncharacterized protein
STRINGcassava4.1_002652m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-135C2H2-like zinc finger protein