PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G022100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 309aa    MW: 34081.6 Da    PI: 9.7932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G022100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-125397147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Manes.14G022100.2.p 53 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 97
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-1647103IPR009057Homeodomain-like
PROSITE profilePS5129413.92248102IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-651103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1851100IPR006447Myb domain, plants
SMARTSM007176.5E-1052100IPR001005SANT/Myb domain
PfamPF002494.4E-105397IPR001005SANT/Myb domain
CDDcd001671.14E-75598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVSKNPNPPD GFYLDPNRMA VPGLGPFATA STTSSSEDPS KKIRKPYTIT KSRESWTEPE  60
HDKFLEALQL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK VEKNGTNEHL PPPRPKRKAA  120
HPYPQKATKN APMLSQTPGS FQSSTALLEP GFVRRPDSTS MPMNPITSAA AVSWSNNLPA  180
VGLSNQTKAN NCSSSSESAP RTKPIGETAE LGNHGHSLRV LPDFAQVYSF IGSIFDPNAA  240
NHLQKLKKMD PIDVETVLLL MRNLSINLTC PEFEDHRRLL STYEIDTEAI GANKTLKDNI  300
PKNVAQFG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G022100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633842.10.0protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-134RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2C9UHS00.0A0A2C9UHS0_MANES; Uncharacterized protein
STRINGcassava4.1_012341m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-122MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]