PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G019000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 346aa    MW: 38561 Da    PI: 4.8297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G019000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-19119168255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+W+AeIrdp +   r r +lg+++taeeAa  +++a+ kl+g
  Manes.14G019000.1.p 119 KFRGVRQRP-WGKWAAEIRDPAK---RVRLWLGTYDTAEEAAMVYDNAAIKLRG 168
                          89*******.**********843...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-30118175IPR001471AP2/ERF domain
SMARTSM003807.1E-39119182IPR001471AP2/ERF domain
PROSITE profilePS5103223.657119176IPR001471AP2/ERF domain
CDDcd000188.51E-34119175No hitNo description
SuperFamilySSF541711.24E-21119175IPR016177DNA-binding domain
PfamPF008478.9E-13119168IPR001471AP2/ERF domain
PRINTSPR003673.7E-10120131IPR001471AP2/ERF domain
PRINTSPR003673.7E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDQSILCPTK YTEYRKVIKK FTKPSLKPKK VSGERNQHIP PRVVRISVTD PDATDSSSDE  60
EGDLFGCKRV KRNVNEISIQ ATYKDTSATI SNGRKRPVSV LPASHSLVRL NTANTTGRKF  120
RGVRQRPWGK WAAEIRDPAK RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD ALTNFITPPG  180
REEQVLEEAE QVEAKRKINV TSTSGYESSD ESHNLSSPTS VLNFRAHCSE ALELQKLVVP  240
AEKSKPVKEE YYQQEQKVSD ESAEYLLPLD LPFLDDFFNF SSTGPSLFDD AVTTTTTTVS  300
SEDFSDISLD TPQDFGSSSM CQDDDLFQDI GDLFFSEPLV ALPDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22117175362ATERF1
3gcc_A3e-22117175362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G019000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634710.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2C9UI070.0A0A2C9UI07_MANES; Uncharacterized protein
STRINGcassava4.1_020929m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-59cytokinin response factor 4