PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G009600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 519aa    MW: 57601.4 Da    PI: 4.7916
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G009600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.49.5e-1131405111374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsev 87 
                          lv+lLl+cAeav  +d++la++lLa++   ++p gd++qR+  +f+ +L++rl+  ++ ++  a++  + + +    +e++ a++l++++
  Manes.14G009600.1.p 140 LVHLLLACAEAVGCRDTQLANSLLAQIWASVNPWGDSLQRVSYCFAMGLKSRLSLlHSVNVTGAFTNGAMDVSLitGEEKMEAFQLLYQT 229
                          68***************************************************98444444445544444433377999*********** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          +P++ f++++aN+aI +a+ g++ +H+iD ++ + lQWp++l++LasRpegpp++RiTg+ + ++++  ele+    La+ A++lg++fe
  Manes.14G009600.1.p 230 TPYIAFGYMAANEAICQAAGGKDSLHVIDVGMDHTLQWPSFLRTLASRPEGPPKVRITGLIN-NEQNLLELEASMMVLAEDASSLGISFE 318
                          ************************************************************99.5579999******************** PP

                 GRAS 178 fnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          fn++ ++ + + l+  +L++++gEal Vn++++lh++++es  + +   ++L+++k+l+P++++vveq+a+hn++ Fl rfle+l+yysa
  Manes.14G009600.1.p 319 FNMISEQiSPSILTRGNLSLREGEALFVNSIMHLHKFVKESRGSLK---AILQAIKKLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSA 405
                          ***8666678899*************************88777666...9**************************************** PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                          +fdslea+lpr+s++r+k+E+  +++ei+n+va eg++r+erhe++ +Wr++l++aGF+ v l+    +qa+++l+ ++ dgy++ +e+g
  Manes.14G009600.1.p 406 IFDSLEASLPRNSQQRMKIEKLHFAEEIRNIVAYEGSDRVERHERADQWRRQLGRAGFQVVGLK--CLSQARMMLSVYGCDGYTLTSEKG 493
                          *************************************************************995..79********************** PP

                 GRAS 357 slvlgWkdrpLvsvSaWr 374
                          +l+lgWk+rp++ +S+W+
  Manes.14G009600.1.p 494 CLLLGWKGRPILLASSWQ 511
                          *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.536114493IPR005202Transcription factor GRAS
PfamPF035143.3E-110140511IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MHRTLNHDLV IRRFCPARME QEQAGDLEET LMNHEFELLS PDDDTTPTTP HLAASEVDKL  60
VDSFINVDEE AKDTDDHPSP KNIPDEMEKF SMVDDVFGDV PMLLEGDDEF EMSTGSSFQD  120
SVAVPSVELV SHGVDQGLHL VHLLLACAEA VGCRDTQLAN SLLAQIWASV NPWGDSLQRV  180
SYCFAMGLKS RLSLLHSVNV TGAFTNGAMD VSLITGEEKM EAFQLLYQTT PYIAFGYMAA  240
NEAICQAAGG KDSLHVIDVG MDHTLQWPSF LRTLASRPEG PPKVRITGLI NNEQNLLELE  300
ASMMVLAEDA SSLGISFEFN MISEQISPSI LTRGNLSLRE GEALFVNSIM HLHKFVKESR  360
GSLKAILQAI KKLNPTLLTV VEQDANHNGP FFLGRFLESL HYYSAIFDSL EASLPRNSQQ  420
RMKIEKLHFA EEIRNIVAYE GSDRVERHER ADQWRRQLGR AGFQVVGLKC LSQARMMLSV  480
YGCDGYTLTS EKGCLLLGWK GRPILLASSW QVHNAPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6514751026378Protein SCARECROW
5b3h_A5e-6514751025377Protein SCARECROW
5b3h_D5e-6514751025377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G009600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633958.10.0DELLA protein RGL1-like, partial
TrEMBLA0A2C9UHF10.0A0A2C9UHF1_MANES; Uncharacterized protein
STRINGcassava4.1_026862m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-83RGA-like 1