PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G002700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 616aa MW: 67936.6 Da PI: 5.9013 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 270 | 290 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ G C++Gd C ++Hg Manes.14G002700.1.p 270 PCPDHRK-GACRRGDLCEYSHG 290 7******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00248 | 0.025 | 60 | 90 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.573 | 60 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-15 | 61 | 144 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.3E-9 | 62 | 129 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 8.82E-15 | 62 | 149 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.0E-16 | 62 | 143 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.01 | 95 | 127 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.728 | 95 | 130 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 0.015 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 270 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.483 | 270 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 86 | 300 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MDMDYTNGTV EAEHSFSVLL EYAADNDVEG FKRSVCDESE IMEVGLWYGH QRLFKRGILE 60 LRTPLMVAAT YGSVEVVKLI LSLPEVDVNF SCGTDKSTAL HCAAAGGSVD AINAVKLLLL 120 AGADPNSTDA NGHRPIDVVV ASPNFPYLKT ALVKLLKNSV NHWDLQFSPS ISLSSEDGSS 180 SSVSGSVLSP TTSKLHDVRV SSAKKEYPVD PTVPDIMSSI YTTDEFRMFS FKIQPCSRAY 240 SHDWTECPFV HPGENARRRD PRRFHYSCLP CPDHRKGACR RGDLCEYSHG IFECWLHPAQ 300 YRTRLCKDGT SCIRRVCFFA HTSDELRPLY MSNGAAAADF TAALSNLSGS PSAVSAMSPL 360 SFTPPISPSS NDLCLSMSWP QCNILNLKTP SNNLQASRLR TPLNAKDIPS EEFNRFQDFE 420 LLQLRLLNEL SCVSQPHYNS SSATLKQLNA TDVDRFLSSK VSSLQNTYQL GAAPVFFPSY 480 NPAVINEFQP QSIPSPIKTG VFSPKNVDYS PLQASFDSSS PMKMSPRLNE LTSPMSSQLP 540 TLPQSEKLQL QLGSLRSQEL GVNADWSIRA DEVGLLQKLC SNEKSVDEPD VSWVQSVLKE 600 SPSETEEKQI SFRFS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G002700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634306.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A251J7Q7 | 0.0 | A0A251J7Q7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003817m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17760 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G002700.1.p |