PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G118400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 348aa    MW: 36521.9 Da    PI: 8.8243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G118400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.25.3e-201257147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Manes.13G118400.1.p 12 KGPWSPEEDEALQKLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                         79******************************.***********985 PP
2Myb_DNA-binding56.56.5e-1866108347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Manes.13G118400.1.p  66 AFSPEEDETIIRAHTRFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.692762IPR017930Myb domain
SuperFamilySSF466893.15E-329105IPR009057Homeodomain-like
SMARTSM007176.4E-181160IPR001005SANT/Myb domain
PfamPF002491.6E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-261365IPR009057Homeodomain-like
CDDcd001675.91E-171456No hitNo description
SMARTSM007173.8E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.57164113IPR017930Myb domain
CDDcd001671.82E-1166109No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2366112IPR009057Homeodomain-like
PfamPF002491.3E-1466108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAVTGKDVDR IKGPWSPEED EALQKLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRAFSPE EDETIIRAHT RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCLSSAVDD  120
GSFGSRDGYD GNLGGNCQPL KRSVSAGSGM PVSTGLYMNP GSPSQSDVSD SSVPVLSSSH  180
VYRPVARAGP VFPPTETTSS CNTNDPPTSL SLSLPGADSS EVSNRVAEST PPTNTISLMP  240
ATTQVPPPAT ATATAQAQVA AAAVAAGMQQ QAAVNGVGGG FVGFTADFMA VMHEMIRREV  300
RNYMMEQSSR GGGGGGNGGG VGMCFQAAGG EGFRNVAMNR IGVSKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-43111123104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-43111123104C-Myb DNA-Binding Domain
1msf_C6e-43111123104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G118400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633153.10.0transcription factor MYB44-like
SwissprotO231601e-107MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2C9USE80.0A0A2C9USE8_MANES; Uncharacterized protein
STRINGcassava4.1_010945m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-93myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]