PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G055600.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 161aa MW: 18007.7 Da PI: 10.0865

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G055600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.7	1.7e-27	43	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k++ ++tr++ r gCka++ vk+ek+gkw+vt++e++HnH+l+ Manes.13G055600.2.p 43 RFYIEYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKSTIGPDKKTRSSAREGCKATILVKMEKSGKWVVTRFEKDHNHPLV 132 5***************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-25	43	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MDLVKEVSEV DSAVEVKTLS VEGDGILEPH VGMEFESEDA ARRFYIEYAR RVGFVVRIMQ 60 RRRSGIDGRT LARRLGCNKQ GFSPNHKSTI GPDKKTRSSA REGCKATILV KMEKSGKWVV 120 TRFEKDHNHP LVVTANGFST TGKLKCPTSS RLCLLQYNLY *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G055600.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631921.1	1e-102	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	6e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2C9UQ84	1e-115	A0A2C9UQ84_MANES; Uncharacterized protein
STRING	XP_002527270.1	7e-81	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.2	5e-51	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.13G055600.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]