PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G12850.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 138aa MW: 15903.2 Da PI: 10.0833 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.2 | 7.8e-25 | 25 | 110 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eY+k++GF vr+ + ++s +g++ r++ C+k+g+ +++++ +++++++r gCka++ vk+ek+gkw+vt++ +eHnH+l+ AT4G12850.2 25 DFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFGPNNQRS----SSSSSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQ 110 6****************************************999888....89999*******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-23 | 25 | 110 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MMTGDLKLDE PYVGLKFESE EEAKDFYVEY SKRLGFVVRM MQRRRSGIDG RTLARRLGCN 60 KQGFGPNNQR SSSSSSSSRE GCKATILVKM EKSGKWVVTR FIKEHNHSLQ FIGSSSYDSF 120 VRFQSLYLWV FLICFAIT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.33440 | 0.0 | flower| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G12850 | |||||
AtGenExpress | AT4G12850 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G12850.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G12850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049640 | 0.0 | AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project). | |||
GenBank | AL161535 | 0.0 | AL161535.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35. | |||
GenBank | BT011770 | 0.0 | BT011770.1 Arabidopsis thaliana At4g12850 mRNA, complete cds. | |||
GenBank | BT012387 | 0.0 | BT012387.1 Arabidopsis thaliana At4g12850 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001319917.1 | 5e-99 | Far-red impaired responsive (FAR1) family protein | ||||
TrEMBL | Q6NLE7 | 1e-97 | Q6NLE7_ARATH; At4g12850 | ||||
STRING | AT4G12850.1 | 1e-82 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G12850.2 |
Entrez Gene | 826897 |
iHOP | AT4G12850 |
wikigenes | AT4G12850 |
Publications ? help Back to Top | |||
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