PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G014800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 391aa MW: 44825.1 Da PI: 6.7118 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 87.8 | 1.3e-27 | 81 | 162 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ Manes.13G014800.1.p 81 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 162 ********************************************************************84...556899***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 73 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.571 | 73 | 137 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.2E-5 | 77 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.36E-29 | 79 | 144 | No hit | No description |
Pfam | PF13837 | 6.3E-22 | 80 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MYLSEKPRPI NFYKEEVPPA TRDNMIIEVV SSNGDLPPHQ HHLHNPHQQQ PPQQQQQMIL 60 GESSGEDNHE VKAPKKRAET WVQDETRSLI ALRREMDGLF NTSKSNKHLW EQISAKMREK 120 GFDRSPTMCT DKWRNLLKEF KKAKHQDRGS GSAKMSYYKE IDEILRERSK NAQYKSPTPT 180 KVDSYMQFAD KGFDEASISF GPVEASGRSA LNLERRLDHD GHPLAITAAE AVAASGVPPW 240 NWRETPGNGA ESQSFVGRVI TVKYGDYTRR IGIDGTADAI KEAIKSAFRL RTKRAFWLED 300 EDQVIRSLDR DMPVGNYTLH LDEGLAVKVC LYDDSDHMPV HTEEKIFYTE DDYRDFLTRR 360 GWSCLREFDG YRNIDNMDDL RPGAIYRGVS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-51 | 75 | 160 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G014800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632785.1 | 0.0 | trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A2C9UMY7 | 0.0 | A0A2C9UMY7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009336m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6817 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G014800.1.p |
Publications ? help Back to Top | |||
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