PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G153500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 878aa    MW: 97331.6 Da    PI: 9.0389
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G153500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06165184525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          lC++fa  G C++G+ C+F H
  Manes.12G153500.1.p 165 LCKDFAV-GRCRRGNHCQFLH 184
                          9******.************* PP
2zf-CCCH20.58.2e-07224243626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C++f++ G C++G++C+F+H 
  Manes.12G153500.1.p 224 CNDFLK-GNCRRGASCRFSHH 243
                          ******.*************6 PP
3zf-CCCH192.6e-06285305425
                          ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                          ++C+ffa+ G C+ G  C+F+H
  Manes.12G153500.1.p 285 VPCKFFAA-GNCRNGKYCRFSH 305
                          59**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.155160187IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4162186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5162185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-6164185IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015218244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3218245IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4224243IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-4281307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77281308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5284306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MSGSGRRRSS KWDLKEESRI PFDSVHDNAW PGKAGLSFHD KESQRGWLSP EGASGTRAKW  60
SALEPLSGRR GSRRDDSIDE ERNRDLKAMP TWDGDENYGT RMSPGLDEWR QQNRHNSPKS  120
ERKRSRRSRS RSQSRSRSRS PARGFGRESV MHDRSRSRSG VSSQLCKDFA VGRCRRGNHC  180
QFLHQDTQGY ADGWERQRKT VTSKYPTHES REYPSGSGRS IDCCNDFLKG NCRRGASCRF  240
SHHVGSVTVK GSSSEVTRER NNDRRHKDAS PERRGEREIH RASDVPCKFF AAGNCRNGKY  300
CRFSHQDLAH VSPDGSRDGR RSLDQNSDDL EKLWNGPKWG PASALDAGKL SGGKSETVGA  360
PDQRRTARSV YDEWGHCLED KTLDDAPIDP KMVQSEATLT WKTENASDNM LASEQRAGGE  420
KWLGDMDMSP EWSYKVRHSN HIDKQDSASL ISCNPSITRE VSGHAGDATA VMPSLINEPS  480
AKPQVYNLRE VGANTLLRDD SVTGKMASSH SGVPANIISA QSFDHNGMNL NALPLPGLNG  540
IGQGQVTIST SGGGDVNPQN QMLLQEGKTI NKPDNREENT SKINSGVSMT QNMVSSEQLT  600
QLTNISASIA QLLANGQQLP HLFVVHNAHN NTEISSSANS EELVKPDSAA TTDSNQNVGL  660
RKQYDPICDS LDTEKNDVNN NPTGFSQNLI MQKNVVDRKL EMSSKSLSPP VAGAPSAGDY  720
KKFHTLQEPN DKSYQVNDMK PGANSKVTKE NNGMVTEESR KVEEDKTAQE NDPAENIDGD  780
GKTDDGKQSK DVKGIRAFKF ALVEFIKELL KPTWKEGQMS KDAYKNIVKK VVDKVTGTMQ  840
GATIPQTQEK IQQYLSFSKP KLTKLVQAYV EKFQKDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G153500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629954.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_021629955.10.0zinc finger CCCH domain-containing protein 38
TrEMBLA0A251JQK00.0A0A251JQK0_MANES; Uncharacterized protein
STRINGcassava4.1_001444m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-19C3H family protein