PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G118600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 356aa    MW: 39325.8 Da    PI: 6.6608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G118600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  Manes.12G118600.1.p 14 KGPWSPEEDAKLKAYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding36.79.6e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Manes.12G118600.1.p  69 GGFSEEEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.162962IPR017930Myb domain
SuperFamilySSF466894.0E-2611109IPR009057Homeodomain-like
SMARTSM007173.9E-121364IPR001005SANT/Myb domain
PfamPF002499.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-241569IPR009057Homeodomain-like
CDDcd001677.03E-91662No hitNo description
PROSITE profilePS5129421.3363117IPR017930Myb domain
SMARTSM007171.6E-1067115IPR001005SANT/Myb domain
PfamPF002491.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370117IPR009057Homeodomain-like
CDDcd001671.74E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQAARRA TLRKELKRES QSFMVPEVMN QKNLNYWPEL PSVAAAMPAM NASTQDSNFW  180
DEESLRSMLV KQGGRFSDDH QESNISSNVY PLDVSCTSNQ DHPYSSSVNI LSSNSAVSIN  240
STDSPCSQLP SANYAVSGAG PSIYQGLEEF PVELHELVYS NNHQLAGLKS FYGMDTTNGG  300
GNWKNGASSS GESASWENIV SSLAYPQLVS ELETCLQSLP QDNSSYEDSS YLGPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G118600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631231.10.0transcription factor RAX3-like
SwissprotQ9M2Y96e-87RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2C9UVU20.0A0A2C9UVU2_MANES; Uncharacterized protein
STRINGcassava4.1_028492m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-83myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]