PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G093800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 303aa MW: 33889.1 Da PI: 6.6941

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G093800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.1	1.1e-41	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC ++Cv+apyfp +qp+kf +vhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+ql Manes.12G093800.1.p 7 PCAACKFLRRKCIQECVFAPYFPPDQPQKFSCVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRLKQL 96 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +++l +k+e Manes.12G093800.1.p 97 QNDLYIAKRE 106 *9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.37	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-41	7	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCIQ ECVFAPYFPP DQPQKFSCVH KVFGASNVAK LLNELNASQR 60 EDAVNSLAYE AEERLRDPVY GCVGLISILQ HRLKQLQNDL YIAKRELAGY IGPSAMLPIL 120 QNPTYMPQQH LGNPSSSNVI PYNMLPMMGI PTGPPHGGQL MIREHPQQHP THPQQQFFEA 180 QQLADAVVVR DQQEMFRTYD QQQPEDQSQH HQELVRYNSG FDAAGLVTAT GYNQLSVASA 240 MSPSLALGIY DNPYQIQQTA HPHHQLQEQL LLQPQQQQPP QLTQQQHQRS GNEEGRSVGP 300 SC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G093800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629989.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_021629990.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	2e-87	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2C9UW34	0.0	A0A2C9UW34_MANES; Uncharacterized protein
STRING	cassava4.1_027088m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-85	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Manes.12G093800.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]