PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.12G088400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 213aa MW: 24058.2 Da PI: 6.9802 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.6e-12 | 21 | 71 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + + +E++RR+++++ f++L +llPk+ +sk l + + +A++YIksL+ Manes.12G088400.1.p 21 TERKVIEKNRRNQMKTLFSNLNSLLPKQ---SSKEaLPLPDQVDEAINYIKSLE 71 56789**********************8...56666****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-12 | 18 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.769 | 18 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 20 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-8 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-4 | 24 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MEMNRSKSKT ATFHSTSATK TERKVIEKNR RNQMKTLFSN LNSLLPKQSS KEALPLPDQV 60 DEAINYIKSL EEKLKKSKEK KESLSGRKRS FSNFVSSFES ASNLVAPKLE IREMGSSLQI 120 ILISGLDNQF IFYDIIHILE DEGVEIPNAS FSVSGNSIFH VVHAQMKESD FSYGAAKVTE 180 RLNRYINGSA SELELGPELW DFNDLNPETW VF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.12G088400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629454.1 | 1e-154 | transcription factor bHLH162-like | ||||
TrEMBL | A0A2C9UWU0 | 1e-152 | A0A2C9UWU0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022872m | 1e-153 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-33 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.12G088400.1.p |