PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G085600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29968.4 Da PI: 6.3177 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l ++ ++G +W+ ++ g+ R++k+c++rw +yl Manes.12G085600.1.p 14 KGAWSPEEDYKLRTYIVRYGHWNWRELPKFAGLQRCGKSCRLRWMNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.3e-18 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ ++eE++l++++++qlG++ W++Ia++++ gRt++++k++w+++l Manes.12G085600.1.p 68 GKYSKEEEDLIIKLHNQLGNK-WSRIAAELP-GRTDNEIKNHWHTHL 112 789******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.4 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.92E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.27 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-17 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-26 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.62E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVRSPFFDKN GLKKGAWSPE EDYKLRTYIV RYGHWNWREL PKFAGLQRCG KSCRLRWMNY 60 LRPGVKHGKY SKEEEDLIIK LHNQLGNKWS RIAAELPGRT DNEIKNHWHT HLKKRSKESQ 120 RESGLKEKYS IEQSSETSQL NGDLKVESFV PNTPSHAILE SFPLSPAPSS SEISHWTSDS 180 NLATLSSTST SSDWIAAEDS LPSFETFENT SEDFWTQPFV ADQDGYKFPM LDEGLISSFL 240 TSYEDSIDLF YKVMQELPGN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 12 | 115 | 5 | 107 | B-MYB |
1h8a_C | 2e-23 | 12 | 115 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G085600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630080.1 | 0.0 | transcription factor MYB15-like | ||||
TrEMBL | A0A2C9UUH6 | 0.0 | A0A2C9UUH6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014242m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-57 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G085600.1.p |