PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.11G161000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 342aa MW: 38873.2 Da PI: 8.7886 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 180 | 199 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r n++ H+ Manes.11G161000.1.p 180 FECSICSKTFNRYNNMQMHM 199 89*****************9 PP | |||||||
2 | zf-C2H2 | 16 | 3.3e-05 | 264 | 286 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Manes.11G161000.1.p 264 FMCRKCGKTFAVKGDWRTHEKNC 286 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-5 | 176 | 203 | No hit | No description |
PROSITE profile | PS50157 | 10.658 | 180 | 207 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 180 | 199 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.096 | 180 | 202 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-5 | 180 | 199 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 182 | 202 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 227 | 259 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.68E-6 | 250 | 284 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-6 | 260 | 284 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 35 | 264 | 284 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.704 | 264 | 284 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MGLWNYHLHN NNLCFQPPPF IEWLKPSSSS SSSSSSLTSS SSSSSSSVTQ QVQLTNPMSI 60 LKLPLLYPQQ QQQPQQQEIV KETIQCLPLL SRLTENKPLK EENMGVQETK EEKIDQKVTV 120 ALHIGLPNSS GDSQVETKVF DFKEQQQPMK KSIHGHCSFN TESRFWIPTP AQILVGPMQF 180 ECSICSKTFN RYNNMQMHMW GHGSEFRRGP DSLKGTQPAA MLRLPCYCCA QGCKNNINHP 240 RAKPLKDFRT LQTHYKRKHG AKPFMCRKCG KTFAVKGDWR THEKNCGKLW YCTCGSDFKH 300 KRSLKDHIRS FGKGHSPHPS LEGFEDDKEC ISASEEDELL H* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.11G161000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627376.1 | 0.0 | zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 1e-133 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A2C9V314 | 0.0 | A0A2C9V314_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011164m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-126 | WIP domain protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.11G161000.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|