PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G152600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 382aa    MW: 42646.9 Da    PI: 8.0057
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G152600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07221243123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk F+r  nL+ H+r H
  Manes.11G152600.1.p 221 HYCQVCGKGFKRDANLRMHMRAH 243
                          68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-6219245No hitNo description
Gene3DG3DSA:3.30.160.601.0E-6221248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034221243IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653221248IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SMARTSM0035577278311IPR015880Zinc finger, C2H2-like
SMARTSM0035522316338IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MIISEAASSF PDVSQGDFQM YPGGEVVVST SLEASSISES HLNSLLYSLC LLKDKVHQVQ  60
SLVNIILFAP NDHQTQPEST SLATARMGNV IQEIIVTASS MALTCQQMAI ASNSAPANNN  120
NTDELHQAAQ ANKVEENGIL QPNFGGNNIG QDREQSFFSS ETFESWYGEN YNNRSNQIQK  180
VERKGFSQGG TSENTAEGKS FVKNYDIVEL DAADLLAKYT HYCQVCGKGF KRDANLRMHM  240
RAHGDEYKTN AALSNPMKNS SMGDNNNNEL WMKLPRKYSC PQEGCRWNQK HAKFQPLKSM  300
ICVKNHYKRS HCPKMYVCKR CNRKQFSVLS DLRTHEKHCG DVKWQCSCGT TFSRKDKLMG  360
HVALFVVGHS PAITSQNHHV D*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G152600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627219.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-108STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2C9V3600.0A0A2C9V360_MANES; Uncharacterized protein
STRINGcassava4.1_031762m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-103C2H2 family protein