PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G146600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 316aa    MW: 35426.1 Da    PI: 8.4845
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G146600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19228261134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Manes.11G146600.1.p 228 CSHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 261
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-18222272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.793222258IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.42E-15226285No hitNo description
Gene3DG3DSA:3.30.50.108.0E-15226259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-15227274No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003202.1E-17228261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNGSWFFDEN FNGVPDDFFD DAIKYFDFPL EDVEPNDAVE HWETRFQPLV PAPSNVFAGL  60
TAGLCGENDN DTLKIKNTSS ILCHESSQQK QWQTAEASSS RSIPLNYDSS EVKCSHVCWT  120
SSPVSVLESS SSSSSAENAV VYHPKFVIPV KRPRSKRPRL QQRTFPFISP SNAPKQLGSS  180
ESESESHHDE KMLNLAKKKQ KKKNLMLLSC TVEMVKPSSQ QPVEIRKCSH CEVTKTPQWR  240
EGPMGPKTLC NACGVRYRSG RLFPEYRPAA SPTFVPSLHS NSHRKVIEMR KKVVKPMNTM  300
AEINKSLPTA PENSF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G146600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628794.10.0GATA transcription factor 11
TrEMBLA0A2C9V3E20.0A0A2C9V3E2_MANES; Uncharacterized protein
STRINGcassava4.1_026346m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-50GATA transcription factor 11