PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G139300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 504aa    MW: 55358.2 Da    PI: 6.7401
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G139300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17166215155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Manes.11G139300.1.p 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215
                          78*******************......55************************997 PP
2AP241.14.4e-13258308155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Manes.11G139300.1.p 258 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 308
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-16166224IPR016177DNA-binding domain
PfamPF008475.8E-9166215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-17167224IPR001471AP2/ERF domain
CDDcd000181.60E-11167225No hitNo description
SMARTSM003801.3E-32167229IPR001471AP2/ERF domain
PROSITE profilePS5103217.794167223IPR001471AP2/ERF domain
CDDcd000186.09E-26258318No hitNo description
PfamPF008471.3E-8258308IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17258317IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-15259316IPR001471AP2/ERF domain
SMARTSM003802.5E-32259322IPR001471AP2/ERF domain
PROSITE profilePS5103215.527259316IPR001471AP2/ERF domain
PRINTSPR003675.5E-6260271IPR001471AP2/ERF domain
PRINTSPR003675.5E-6298318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MLDLNLNAES SESIQNSDSV ALMDKYQYQY PEGSGTSNSS IVNADVSSND DSCSTRACTG  60
DASNSSKNNT SSMFTFNFDI LKVGGGGGGG NENETVAAVT KEFFPLSNGK GVAGDYGNFF  120
GQGSSKNWID LSFERRHDIG DGEVRKVQPP LQQVKKSRRG PRSRSSQYRG VTFYRRTGRW  180
ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED LKQMKNLTKE  240
EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD  300
KAAIKCNGRE AVTNFEPSTY EGEMMSEASN EGSEHNLDLN LGISPSLDDG PRENEGHLQF  360
HLGPYDMDRK SLRQENPTAL MVGDLPFKGP VTTDQPTSRN NVYASFFPNE EGAPDKRIEL  420
GSSQGLPNWA WQMHGHVTAT PMTMFSTAAS SGFSFSATPP SAATLPSKTL NQAAQNLCFT  480
PPATMTPSSS HFYYPVKPPR APP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G139300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628560.10.0ethylene-responsive transcription factor RAP2-7-like isoform X6
SwissprotQ9SK031e-124RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A251JVV00.0A0A251JVV0_MANES; Uncharacterized protein
STRINGcassava4.1_006069m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-136related to AP2.7