PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G137700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WOX
Protein Properties Length: 105aa    MW: 12399.3 Da    PI: 10.7428
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G137700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.1e-21766357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eql +Leel+++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Manes.11G137700.1.p  7 SRWCPTPEQLMILEELYRSgIRTPNASQIQRITSHLslygKIEGKNVFYWFQNHKARDRQ 66
                         7*****************99*************************************996 PP
2Wus_type_Homeobox1231.1e-39567264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         a++RW+PtpeQ++iLeely+sG+rtPn+++iqrit++L+ yGkie+kNVfyWFQN+kaR+rqk
  Manes.11G137700.1.p  5 ASSRWCPTPEQLMILEELYRSGIRTPNASQIQRITSHLSLYGKIEGKNVFYWFQNHKARDRQK 67
                         689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.139267IPR001356Homeobox domain
SMARTSM003891.5E-5471IPR001356Homeobox domain
PfamPF000461.2E-18766IPR001356Homeobox domain
SuperFamilySSF466897.27E-12767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-8766IPR009057Homeodomain-like
CDDcd000864.34E-4867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MSPAASSRWC PTPEQLMILE ELYRSGIRTP NASQIQRITS HLSLYGKIEG KNVFYWFQNH  60
KARDRQKLRR KLLKQLQHNQ IYLQNQSPPF HPLPYHHSPA LLPQV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G137700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021666132.16e-54WUSCHEL-related homeobox 3-like
SwissprotQ9SIB41e-42WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A2C9V2A31e-71A0A2C9V2A3_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_030827m2e-71(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.15e-39WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]