PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G131800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WOX | ||||||||
Protein Properties | Length: 209aa MW: 24085.3 Da PI: 9.6993 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 38.4 | 2.1e-12 | 11 | 47 | 25 | 57 |
--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 25 psaeereeLAkkl....gLterqVkvWFqNrRakekk 57 p ++++++++++l +++e++V++WFqNr+a++++ Manes.11G131800.1.p 11 PGRTQIQQITSRLkqygHIEEKNVFYWFQNRKARQRQ 47 8899*******************************97 PP | |||||||
2 | Wus_type_Homeobox | 69.3 | 6.7e-23 | 8 | 49 | 24 | 65 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + P + +iq+it++L++yG+ie+kNVfyWFQNrkaR+rqkq Manes.11G131800.1.p 8 MAGPGRTQIQQITSRLKQYGHIEEKNVFYWFQNRKARQRQKQ 49 6789************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.928 | 1 | 48 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00433 | 11 | 49 | No hit | No description |
Pfam | PF00046 | 5.4E-10 | 11 | 47 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.8E-8 | 11 | 54 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-6 | 14 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MKSETMDMAG PGRTQIQQIT SRLKQYGHIE EKNVFYWFQN RKARQRQKQK QENTAYINRY 60 LHKAYQPVFS PLCSNVICGS YYLPRRDLGF YLRYPKVLLP NGFKRRPRSE KIDKARAYAF 120 TDSKQETIDD KFFGNNEETL PLFLLHPTGV LQGRAETLRS LGSMICAAEN SIANSASSSS 180 EMTTGVEDVS SDKPFFDIYF FFHETNAK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G131800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021682189.1 | 2e-88 | WUSCHEL-related homeobox 2-like | ||||
TrEMBL | A0A2C9V2I9 | 1e-156 | A0A2C9V2I9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021403m | 1e-136 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 8e-18 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G131800.1.p |