PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G119600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 28475.5 Da PI: 6.6809 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.4 | 8.9e-30 | 2 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +p GfrF+Ptd+el+ + L +k+++++++l ++i ++++y++eP+dL+ + +++ +++e y+++kr++ + + ++ +g Wkat + Manes.11G119600.1.p 2 VPHGFRFNPTDQELI-QILDQKASAQEMPL-HFIVHANLYEHEPQDLEwNhSATLGNEERYYYCKRENDS------REVAGRGWWKATSH 83 589************.88************.89**************9633444588899*****98853......347889******** PP NAM 89 dkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 k+v + +++lvg k+ L+f+ + +++++ kt+W+mhey+l Manes.11G119600.1.p 84 VKKVNV-NENLVGHKRPLTFHryrdqERNRSNAIKTNWIMHEYSL 127 *****9.999***********7766445666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-34 | 2 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.334 | 2 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-17 | 3 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVPHGFRFNP TDQELIQILD QKASAQEMPL HFIVHANLYE HEPQDLEWNH SATLGNEERY 60 YYCKRENDSR EVAGRGWWKA TSHVKKVNVN ENLVGHKRPL TFHRYRDQER NRSNAIKTNW 120 IMHEYSLESK TTEWRLCKIK YKGKPSIQEE LENIRQRYSS RIDSEASGSS MNIQLGSDRE 180 QENPSPSVSS TMAPLQNGHY WNMQQLSPPP NGYGDLYTSY YFNEQLELSE QQFSSLWSWQ 240 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-22 | 2 | 149 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-22 | 2 | 149 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-22 | 2 | 149 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-22 | 2 | 149 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-22 | 2 | 149 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-22 | 2 | 149 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-22 | 2 | 149 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-22 | 2 | 149 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G119600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605206 | 0.0 | KR605206.1 Manihot esculenta NAC transcription factors 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627079.1 | 0.0 | NAC domain-containing protein 72-like | ||||
TrEMBL | A0A0M5JDC2 | 0.0 | A0A0M5JDC2_MANES; NAC transcription factors 68 | ||||
STRING | cassava4.1_027454m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15526 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 3e-23 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G119600.1.p |
Publications ? help Back to Top | |||
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