PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G111500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 874aa MW: 98550 Da PI: 6.6186

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G111500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	63	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GFs ++ + ++sk++g++++r+fvC +eg ++++ ++ C+a+l+++++ +kw+vtk+ +eH+H+++ Manes.11G111500.1.p 63 FYDEYARRLGFSSKVVHFNRSKTDGTVVSREFVCGREGLKRRSADS--------------CDAMLRIELKGPNKWVVTKFIKEHSHSMV 137 9************************************9998877..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-14	63	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-28	268	360	IPR018289	MULE transposase domain
Pfam	PF04434	2.1E-10	546	580	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.115	546	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence Send to blast
MDVHVIDEEE GMGHRVLVYD RDAEPSEGGE ANNAEHSSAH DEDGAAEPHV GMEFHSEDSA 60 KTFYDEYARR LGFSSKVVHF NRSKTDGTVV SREFVCGREG LKRRSADSCD AMLRIELKGP 120 NKWVVTKFIK EHSHSMVNPS KVHYLRPRRH FAGANKSITE TYQGVGIVPS GVMYVSAEAN 180 RGLRTSPATE PNRVINNAAT LNYAVRSNAR RRTLGRDAQN LLEYFKKMQA ENPGFFYAIQ 240 LDDDNCMANV FWADARSRTA YNHFGDAVTL DTSYRINQYR VPFAPFTGVN HHGQTILFGC 300 AILLDDSEAS FVWLFKTFLT AMNDRQPVSI VTDQDRAIQT AVSQVFPEAR HCISKWHVLR 360 EGQEKLAHVC HAHLNFQVEL YNCINLTETI EEFESSWSSI LDKYDLRGHD WLQSLYDARA 420 QWVPVYFRDS FFAVISQNQG FEGSFFDGYV NQQTTLPMFF RQYERALENC FERQLEADFD 480 TICTTPVLRT PSPMEKQAAN LYTRKIFAKF QEELVETFVY TANKIEDDGA ISTFRVAKFE 540 DDNKAYVVTL NYPEMRANCS CQMFEYSGIL CRHVLTVFTV TNVLTLPSHY ILKRWTRNAK 600 TGSGIDECGG ELHGQESLTL RYNNLCREAV KYAEEGAIAV DTYNVAIAAL REGVKKIAAV 660 KKNAAKIIPP SSLVGGIGYD DRKTSTSASD TTPLLWPRQD EATRRFNLND AGGPAQSVAD 720 LNLPRMAPVS LQRDDGPPGN MAVLPCLKSM TWVMENKNTT PGNRVAVINL KLQDYSKTPS 780 TEFEVKFQLS RVTLEPMLRS MAYISEQLST PANRVAVINL KLQDTETTSG ESEVKFQVSR 840 DTLGAMLRSM AYIREQLSAA DPQPEPLSKK QRK*

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence Send to blast

MDVHVIDEEE GMGHRVLVYD RDAEPSEGGE ANNAEHSSAH DEDGAAEPHV GMEFHSEDSA  60
KTFYDEYARR LGFSSKVVHF NRSKTDGTVV SREFVCGREG LKRRSADSCD AMLRIELKGP  120
NKWVVTKFIK EHSHSMVNPS KVHYLRPRRH FAGANKSITE TYQGVGIVPS GVMYVSAEAN  180
RGLRTSPATE PNRVINNAAT LNYAVRSNAR RRTLGRDAQN LLEYFKKMQA ENPGFFYAIQ  240
LDDDNCMANV FWADARSRTA YNHFGDAVTL DTSYRINQYR VPFAPFTGVN HHGQTILFGC  300
AILLDDSEAS FVWLFKTFLT AMNDRQPVSI VTDQDRAIQT AVSQVFPEAR HCISKWHVLR  360
EGQEKLAHVC HAHLNFQVEL YNCINLTETI EEFESSWSSI LDKYDLRGHD WLQSLYDARA  420
QWVPVYFRDS FFAVISQNQG FEGSFFDGYV NQQTTLPMFF RQYERALENC FERQLEADFD  480
TICTTPVLRT PSPMEKQAAN LYTRKIFAKF QEELVETFVY TANKIEDDGA ISTFRVAKFE  540
DDNKAYVVTL NYPEMRANCS CQMFEYSGIL CRHVLTVFTV TNVLTLPSHY ILKRWTRNAK  600
TGSGIDECGG ELHGQESLTL RYNNLCREAV KYAEEGAIAV DTYNVAIAAL REGVKKIAAV  660
KKNAAKIIPP SSLVGGIGYD DRKTSTSASD TTPLLWPRQD EATRRFNLND AGGPAQSVAD  720
LNLPRMAPVS LQRDDGPPGN MAVLPCLKSM TWVMENKNTT PGNRVAVINL KLQDYSKTPS  780
TEFEVKFQLS RVTLEPMLRS MAYISEQLST PANRVAVINL KLQDTETTSG ESEVKFQVSR  840
DTLGAMLRSM AYIREQLSAA DPQPEPLSKK QRK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G111500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021627981.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_021627982.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_021627983.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A251KAB7	0.0	A0A251KAB7_MANES; Uncharacterized protein
STRING	cassava4.1_001462m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Manes.11G111500.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]