PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G064700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 280aa MW: 31032.4 Da PI: 6.4247 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Manes.11G064700.1.p 104 FSCNYCQRKFYSSQALGGHQNAH 126 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.4E-6 | 100 | 131 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEPPRSEVCL SETSSIISVS NAPSNPSLKS SMDCKKEVKQ LAEGEEELEE EDDDEQDQDL 60 VLDLSLTSKD SKPELNLIDS FDMESSQKSS LDTPQGNETE PRIFSCNYCQ RKFYSSQALG 120 GHQNAHKRER TLAKRGQRIS TGGPFGLGHR HNSHLNRYSS MASLPLHGSL SRSLGIQVHS 180 MIHKPTLVPS STFGSSNIYG QNGWSRKPID QQPAVGRLAP ESFYMETNMG SSNGVARFES 240 ARKFSPAREG IEGYWWDAGV NHLKSKRDDL QKLDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G064700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627580.1 | 0.0 | zinc finger protein 1-like | ||||
TrEMBL | A0A2C9UZ37 | 0.0 | A0A2C9UZ37_MANES; Uncharacterized protein | ||||
STRING | XP_002527314.1 | 1e-139 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 1e-46 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G064700.1.p |