PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G008800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YC
Protein Properties Length: 312aa    MW: 34013.5 Da    PI: 4.8456
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G008800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.12e-186861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+    ++ +v++ ++fdfl +iv r
  Manes.11G008800.1.p  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLREIVSR 86
                         5789*************************************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.8E-26372IPR009072Histone-fold
SuperFamilySSF471132.1E-20490IPR009072Histone-fold
PfamPF008083.5E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMSALHLKHC VQSYNVFDFL REIVSRVPDY SHGHSDNTAD HRTHQKRKPI GEECNDSDEE  120
LKRSRMHEVM SHAGSSGRGR GRGRGRGRGR GARNVERESS HREIESEPST TLQQNLKNNS  180
NPGTVVDNDS EQKELLEEDM IVSDGANASE RNFDLNADVN ENEDTKAATV AAATAPVPAP  240
AAAAPAAAPA AAVAATVIDN SSAAPAAATN HEEYPGWSLS EMDKMAIDPL QLANLGTRID  300
EEEEEDYDEE G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A7e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139149RGRGRGRGRGR
2141150RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G008800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2904631e-33KF290463.1 Jatropha curcas clone pJcSSR2604 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628782.10.0dr1-associated corepressor-like
TrEMBLA0A2C9UZ910.0A0A2C9UZ91_MANES; Uncharacterized protein
STRINGcassava4.1_012312m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.16e-71nuclear factor Y, subunit C11