PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G144700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 362aa    MW: 40283.8 Da    PI: 8.05
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G144700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k++lC+ffa  G C  G+ C F+H+
  Manes.10G144700.1.p  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                         99****6666.*************5 PP
2zf-CCCH26.21.4e-083454526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         +C ++++ G+C+yG+rC++ H+
  Manes.10G144700.1.p 34 ICTYYQK-GICSYGSRCRYEHV 54
                         7******.***********997 PP
3zf-CCCH17.66.8e-06142164326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++lC+ fa+ G C++Gd+C+ +Hg
  Manes.10G144700.1.p 142 RSLCS-FAAVGNCPRGDKCPHIHG 164
                          78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6052956IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-43453IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4144164IPR000571Zinc finger, CCCH-type
SuperFamilySSF578508.25E-14196272No hitNo description
Gene3DG3DSA:3.30.40.105.0E-10201267IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00104207267No hitNo description
PfamPF000975.1E-7208265IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.1E-7208265IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.238208266IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.235295324IPR000571Zinc finger, CCCH-type
SMARTSM003560.54295323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR YEHVKLSKLN  60
SASSSSTVPL QSAVSISVPL ARSVRTGFDR GTSAPGATGE LSASSRPYFP PTKPAWNLES  120
VPNNILENDD IIEPRNVKPE ERSLCSFAAV GNCPRGDKCP HIHGDICPTC GKHSLHPFRP  180
EEREEHLKTC EKKQKYLEAL KHSQEIECSV CLDRVLSKPT AAERKFGLLS ECDHPFCISC  240
IRNWRSNSPT SGMDVNTALR ACPICRKLSY FVVPSVIWYS SKEEKLEIID SYKAKLSSID  300
CKHFDFGNGS CPFGTSCFYK HAYRDGCLEE VALRHLGAED GNTVIAKNIR LSDFLSSLQL  360
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G144700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625677.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-175C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2C9V7U80.0A0A2C9V7U8_MANES; Uncharacterized protein
STRINGcassava4.1_010375m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-162C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]