PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G142900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 747aa    MW: 80827.4 Da    PI: 6.5557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G142900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07325345526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Manes.10G142900.1.p 325 PCPDFRK-GACRRGDMCEYAHG 345
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024822003867IPR002110Ankyrin repeat
SuperFamilySSF484032.02E-1839181IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.4E-1842164IPR020683Ankyrin repeat-containing domain
CDDcd002046.33E-1642180No hitNo description
PfamPF127962.7E-1145151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.7184105IPR002110Ankyrin repeat
SMARTSM002480.00284114IPR002110Ankyrin repeat
PROSITE profilePS5029718.27184160IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.514119154IPR002110Ankyrin repeat
SMARTSM002480.005119151IPR002110Ankyrin repeat
SMARTSM003564.0E-6320346IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5325345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582325347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4325347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4353383IPR000571Zinc finger, CCCH-type
SMARTSM0035646355378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MCGGPDRSSK SSAPSPSTVE ITANTKDMNH LTVETGDSFC NLLELAANND VEGFKQLIER  60
DASSTNEVGY WYGRQKGSKN VVLDHRTPLM VAATYGSIDV IKFLLTDTDA DVNLSCGMDK  120
TTALHCAASG GSLNAVEVVK LLLSAGAYVN CLDANGYRPV DVIVVPPKLH SMRDALKELL  180
SNSISNGSLG ERNCNGSVGE NTSNGSVGEC NLRVSISTSN TSSPTLSSSP ENGSMSSPVL  240
GSSPMSSKYN DLPINTSEKK EYPIDPSLPD IKNSIYATDE FRMYSFKIRP CSRAYSHDWT  300
ECPFVHPGEN ARRRDPRKFH YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL  360
CKDGTCCNRR VCFFAHTPEE LRPLYVSTGS AVPSPRSSAS AASVMDMAAA LSLLPASPSS  420
VSAMSPTPFN QPMSPTASIS HSSAAWPQPN IPTLHLPLSN LQSSRLRSSL SARDIPPEDL  480
NLLPDFDAQQ QILNDLTCFS LSRSNSVSLN HSGRSKALTP SNLEELFSAE ISSPRYADQA  540
AAVFSPSHKS AVFNQFQQQQ SMLSPINTSV FSPKNVEHPL LQASFGVGSP GRMSPRSVEP  600
ISPMGSRLSA FAQREKQNQQ LRSLSSRDLG SNNPAVSIVG STVNSWTKWG SPNGKLDWSV  660
SGRNDLGQLR RSSSFELANN GEEPDLSWVQ SLVKESPPEM IKEKYGVPVS GAASTGEGLN  720
PSSQIDSVLE SWLEQMQLDQ QQQLVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G142900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624638.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2C9V7S60.0A0A2C9V7S6_MANES; Uncharacterized protein
STRINGcassava4.1_002316m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]