PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G129900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 320aa    MW: 36481.7 Da    PI: 8.2123
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G129900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-1649881150
                         HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          +f +Rr +++KKA EL +LCd++v+v+ fs++gk+  ++
  Manes.10G129900.1.p 49 KSFDRRRPTLMKKARELQTLCDVDVCVVCFSPDGKVDVWP 88
                         5899********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-72989IPR002100Transcription factor, MADS-box
CDDcd002665.04E-1736113No hitNo description
SuperFamilySSF554553.92E-1744109IPR002100Transcription factor, MADS-box
PfamPF003193.2E-164587IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.3765091IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVFSQQNSSQ EIKKRGRKPK KVPLVDGKEP RKANFIKKII DGHKQTQAKS FDRRRPTLMK  60
KARELQTLCD VDVCVVCFSP DGKVDVWPED QTRVKDLIFK YKALDKNKKK ESDYLDFLES  120
KKVKLQNKKE KMMKLKIDGL ISGLSKKLDS LSGDSLMDSV NELEAKIKNL KLKIELLRTE  180
EEKAKAVQAD KQIIINTQSS VLNSTSEIIH QEFDHNWPWK NYMNSDTNTP VDHGSCSSFP  240
DIDSLIEENF ELLSGVFCSE DPVNHLQAAV NDFPLQENAD KPQENFGMVM GDNHGFLSEA  300
LPISVWAPQL SHFQSWKQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G129900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626625.10.0agamous-like MADS-box protein AGL81
TrEMBLA0A2C9V7420.0A0A2C9V742_MANES; Uncharacterized protein
STRINGcassava4.1_030229m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-16AGAMOUS-like 103